Explore the .claude directory

Claude Code reads instructions, settings, skills, subagents, and memory from your project directory and from ~/.claude in your home directory. Commit project files to git to share them with your team; files in ~/.claude are personal configuration that applies across all your projects. On Windows, ~/.claude resolves to %USERPROFILE%\.claude. If you set CLAUDE_CONFIG_DIR, every ~/.claude path on this page lives under that directory instead. Most users only edit CLAUDE.md and settings.json. The rest of the directory is optional: add skills, rules, or subagents as you need them.

Explore the directory

Click files in the tree to see what each one does, when it loads, and an example.

What’s not shown

The explorer covers files you author and edit. A few related files live elsewhere:

File	Location	Purpose
`managed-settings.json`	System-level, varies by OS	Enterprise-enforced settings that you can’t override. See server-managed settings.
`CLAUDE.local.md`	Project root	Your private preferences for this project, loaded alongside CLAUDE.md. Create it manually and add it to `.gitignore`.
Installed plugins	`~/.claude/plugins`	Cloned marketplaces, installed plugin versions, and per-plugin data, managed by `claude plugin` commands. Orphaned versions are deleted 7 days after a plugin update or uninstall. See plugin caching.

~/.claude also holds data Claude Code writes as you work: transcripts, prompt history, file snapshots, caches, and logs. See application data below.

Choose the right file

Different kinds of customization live in different files. Use this table to find where a change belongs.

You want to	Edit	Scope	Reference
Give Claude project context and conventions	`CLAUDE.md`	project or global	Memory
Allow or block specific tool calls	`settings.json` `permissions` or `hooks`	project or global	Permissions, Hooks
Run a script before or after tool calls	`settings.json` `hooks`	project or global	Hooks
Set environment variables for the session	`settings.json` `env`	project or global	Settings
Keep personal overrides out of git	`settings.local.json`	project only	Settings scopes
Add a prompt or capability you invoke with `/name`	`skills/<name>/SKILL.md`	project or global	Skills
Define a specialized subagent with its own tools	`agents/*.md`	project or global	Subagents
Orchestrate many subagents from a script	`workflows/*.js`	project or global	Dynamic workflows
Connect external tools over MCP	`.mcp.json`	project only	MCP
Change how Claude formats responses	`output-styles/*.md`	project or global	Output styles

File reference

This table lists every file the explorer covers. Project-scope files live in your repo under .claude/ (or at the root for CLAUDE.md, .mcp.json, and .worktreeinclude). Global-scope files live in ~/.claude/ and apply across all projects.

Several things can override what you put in these files:

Managed settings deployed by your organization take precedence over everything
CLI flags like --permission-mode or --settings override settings.json for that session
Some environment variables take precedence over their equivalent setting, but this varies: check the environment variables reference for each one

See settings precedence for the full order.

Click a filename to open that node in the explorer above.

File	Scope	Commit	What it does	Reference
`CLAUDE.md`	Project and global	✓	Instructions loaded every session	Memory
`rules/*.md`	Project and global	✓	Topic-scoped instructions, optionally path-gated	Rules
`settings.json`	Project and global	✓	Permissions, hooks, env vars, model defaults	Settings
`settings.local.json`	Project only		Your personal overrides, gitignored when Claude Code creates it	Settings scopes
`.mcp.json`	Project only	✓	Team-shared MCP servers	MCP scopes
`.worktreeinclude`	Project only	✓	Gitignored files to copy into new worktrees	Worktrees
`skills/<name>/SKILL.md`	Project and global	✓	Reusable prompts invoked with `/name` or auto-invoked	Skills
`commands/*.md`	Project and global	✓	Single-file prompts; same mechanism as skills	Skills
`output-styles/*.md`	Project and global	✓	Custom system-prompt sections	Output styles
`agents/*.md`	Project and global	✓	Subagent definitions with their own prompt and tools	Subagents
`workflows/*.js`	Project and global	✓	Dynamic workflow scripts written by Claude and saved from `/workflows`; each file becomes a `/<name>` command	Dynamic workflows
`agent-memory/<name>/`	Project and global	✓	Persistent memory for subagents	Persistent memory
`~/.claude.json`	Global only		App state, OAuth, UI toggles, personal MCP servers	Global config
`projects/<project>/memory/`	Global only		Auto memory: Claude’s notes to itself across sessions	Auto memory
`keybindings.json`	Global only		Custom keyboard shortcuts	Keybindings
`themes/*.json`	Global only		Custom color themes	Custom themes

Troubleshoot configuration

If a setting, hook, or file isn’t taking effect, see Debug your configuration for the inspection commands and a symptom-first lookup table.

Application data

Beyond the config you author, ~/.claude holds data Claude Code writes during sessions. These files are plaintext. Anything that passes through a tool lands in a transcript on disk: file contents, command output, pasted text.

Cleaned up automatically

Files in the paths below are deleted on startup once they’re older than cleanupPeriodDays. The default is 30 days.

Path under `~/.claude/`	Contents
`projects/<project>/<session>.jsonl`	Full conversation transcript: every message, tool call, and tool result
`projects/<project>/<session>/subagents/`	Subagent conversation transcripts, removed with the parent session transcript when it ages out
`projects/<project>/<session>/tool-results/`	Large tool outputs spilled to separate files
`file-history/<session>/`	Pre-edit snapshots of files Claude changed, used for checkpoint restore. Holds snapshots for the 100 most recent checkpoints; snapshot files that no retained checkpoint references are deleted, except each file’s first snapshot
`plans/`	Plan files written during plan mode
`debug/`	Per-session debug logs, written only when you start with `--debug` or run `/debug`
`paste-cache/`, `image-cache/`	Contents of large pastes and attached images
`session-env/`	Per-session environment metadata
`tasks/`	Per-session task lists written by the task tools
`shell-snapshots/`	Aliases, functions, and shell options captured at startup and applied by the Bash tool to each command. Removed on clean exit. The sweep clears any left after a crash.
`backups/`	Timestamped copies of `~/.claude.json` taken before config migrations
`feedback-bundles/`	Redacted transcript archives written by `/feedback` on third-party providers or when no Anthropic credentials are configured, for sending to your Anthropic account team
`todos/`, `statsig/`, `logs/`	Legacy directories from older versions. No longer written. The sweep removes their contents and then the empty directory.

sessions/ holds one small file per running session, used to detect concurrent sessions and crashes. It isn’t part of the age-based sweep: Claude Code removes each file when its session exits and clears crash leftovers on the next launch.

Kept until you delete them

The following paths are not covered by automatic cleanup and persist indefinitely.

Path under `~/.claude/`	Contents
`history.jsonl`	Every prompt you’ve typed, with timestamp and project path. Used for up-arrow recall.
`stats-cache.json`	Aggregated token and cost counts shown by `/usage`
`remote-settings.json`	Cached copy of server-managed settings for your organization. Only present when your organization has configured them. Refreshed on each launch.
`cache/changelog.md`	Cached copy of the Claude Code changelog, used to show release notes after an update. Refreshed in the background.
`policy-limits.json`	Cached feature policy settings for your organization. Only present for some account types. Refreshed automatically.

Other small cache and lock files appear depending on which features you use and are safe to delete.

Plaintext storage

Transcripts and history are not encrypted at rest. OS file permissions are the only protection. If a tool reads a .env file or a command prints a credential, that value is written to projects/<project>/<session>.jsonl. To reduce exposure:

Lower cleanupPeriodDays to shorten how long transcripts are kept
Set the CLAUDE_CODE_SKIP_PROMPT_HISTORY environment variable to skip writing transcripts and prompt history in any mode. In non-interactive mode, you can instead pass --no-session-persistence alongside -p, or set persistSession: false in the Agent SDK.
Use permission rules to deny reads of credential files

Clear local data

Run claude project purge to delete the state Claude Code holds for one project. The command requires Claude Code v2.1.124 or later. It deletes:

Transcripts and auto memory under projects/
Per-session tasks/, debug/, and file-history/ entries
Matching prompt lines in history.jsonl
The project’s entry in ~/.claude.json

The command prints the full deletion plan and asks for confirmation before removing anything. The examples below use ~/work/my-repo as a placeholder. Replace it with the path to your project. If no state matches the path, the command prints an error and exits with status 1. Preview the plan without deleting anything:

claude project purge ~/work/my-repo --dry-run

The plan lists each matching item and why it is included:

Purge plan for /home/user/work/my-repo:

  dir:    /home/user/.claude/projects/-home-user-work-my-repo
           project transcripts (.jsonl) and memory/
  config: projects["/home/user/work/my-repo"]
           project entry in ~/.claude.json (trust, history, MCP servers)
  filter: /home/user/.claude/history.jsonl
           12 prompt(s) typed in this project

shell-snapshots/ are not project-scoped and will not be touched
backups/ may still contain this project entry in old .claude.json snapshots (/home/user/.claude/backups); at most 5 are kept and they rotate out automatically
Dry run: 3 item(s) would be deleted.

Delete with a single confirmation prompt:

claude project purge ~/work/my-repo

The command prints the same plan, then asks Delete 3 item(s) for /home/user/work/my-repo? This cannot be undone. [y/N] and deletes only if you answer y. Omit the path to pick a project from an interactive list. Skip the confirmation prompt for use in scripts:

claude project purge ~/work/my-repo --yes

Pass --all instead of a path to purge state for every project at once, which deletes history.jsonl outright rather than filtering it. Pass -i to step through the deletion plan one item at a time. The command leaves shell-snapshots/ and backups/ alone because those are not project-scoped, and warns about them in the plan output. You can also delete any of the application-data paths above by hand. New sessions are unaffected. The table below shows what you lose for past sessions.

Delete	You lose
`~/.claude/projects/`	Resume, continue, and rewind for past sessions
`~/.claude/history.jsonl`	Up-arrow prompt recall
`~/.claude/file-history/`	Checkpoint restore for past sessions
`~/.claude/stats-cache.json`	Historical totals shown by `/usage`
`~/.claude/remote-settings.json`	Nothing. Re-fetched on next launch.
`~/.claude/cache/changelog.md`	Nothing. Refreshed in the background.
`~/.claude/policy-limits.json`	Nothing. Refreshed automatically.
`~/.claude/debug/`, `~/.claude/plans/`, `~/.claude/paste-cache/`, `~/.claude/image-cache/`, `~/.claude/session-env/`, `~/.claude/tasks/`, `~/.claude/shell-snapshots/`, `~/.claude/backups/`	Nothing user-facing
`~/.claude/todos/`, `~/.claude/statsig/`, `~/.claude/logs/`	Nothing. Legacy directories not written by current versions.

Don’t delete ~/.claude.json, ~/.claude/settings.json, or ~/.claude/plugins/: those hold your auth, preferences, and installed plugins.

Manage Claude’s memory: write and organize CLAUDE.md, rules, and auto memory
Configure settings: set permissions, hooks, environment variables, and model defaults
Create skills: build reusable prompts and workflows
Configure subagents: define specialized agents with their own context

Getting started

Core concepts

Use Claude Code

Platforms and integrations

Explore the .claude directory

Explore the directory

What’s not shown

Choose the right file

File reference

Troubleshoot configuration

Application data

Cleaned up automatically

Kept until you delete them

Plaintext storage

Clear local data

​Explore the directory

​What’s not shown

​Choose the right file

​File reference

​Troubleshoot configuration

​Application data

​Cleaned up automatically

​Kept until you delete them

​Plaintext storage

​Clear local data

​Related resources

Explore the directory

What’s not shown

Choose the right file

File reference

Troubleshoot configuration

Application data

Cleaned up automatically

Kept until you delete them

Plaintext storage

Clear local data

Related resources